Detailed information of SNP:
|
SNP ID:
sf0714863477(Gbrowse)
Chromosome: chr07 Position: 14863477 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 57.36% | 42.64% |
| All Indica | 779 | 92.81% | 7.19% |
| All Japonica | 495 | 6.06% | 93.94% |
| Aus | 57 | 40.35% | 59.65% |
| Indica I | 367 | 95.91% | 4.09% |
| Indica II | 203 | 92.12% | 7.88% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 92 | 1.09% | 98.91% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714863477 | A->G | INTERGENIC | None |