Detailed information of SNP:
|
SNP ID:
sf0714875946(Gbrowse)
Chromosome: chr07 Position: 14875946 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 86.70% | 13.30% |
| All Indica | 766 | 80.42% | 19.58% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 52.31% | 47.69% |
| Indica I | 356 | 81.18% | 18.82% |
| Indica II | 204 | 77.94% | 22.06% |
| Indica Intermediate | 206 | 81.55% | 18.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714875946 | G->A | LOC_Os07g25910(LOC_Os07g25910.1) | Non-Synonymous SNP |