Detailed information of SNP:
|
SNP ID:
sf0714876060(Gbrowse)
Chromosome: chr07 Position: 14876060 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.36% | 5.64% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714876060 | G->A | LOC_Os07g25910(LOC_Os07g25910.1) | Non-Synonymous SNP |