Detailed information of SNP:
|
SNP ID:
sf0714879397(Gbrowse)
Chromosome: chr07 Position: 14879397 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 90.34% | 9.66% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 87.32% | 12.68% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 81.19% | 18.81% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714879397 | T->C | INTERGENIC | None |