Detailed information of SNP:
|
SNP ID:
sf0714885071(Gbrowse)
Chromosome: chr07 Position: 14885071 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 93.34% | 6.66% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 489 | 90.39% | 9.61% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 327 | 85.63% | 14.37% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714885071 | C->G | INTERGENIC | None |