Detailed information of SNP:
|
SNP ID:
sf0714932677(Gbrowse)
Chromosome: chr07 Position: 14932677 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 61.07% | 38.93% |
| All Indica | 780 | 92.18% | 7.82% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 360 | 90.00% | 10.00% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 14.03% | 85.97% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714932677 | T->C | LOC_Os07g26030(LOC_Os07g26030.1) | Non-Synonymous SNP |