Detailed information of SNP:
|
SNP ID:
sf0714951317(Gbrowse)
Chromosome: chr07 Position: 14951317 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1294 | 72.49% | 27.51% |
| All Indica | 681 | 58.15% | 41.85% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 315 | 61.90% | 38.10% |
| Indica II | 184 | 57.07% | 42.93% |
| Indica Intermediate | 182 | 52.75% | 47.25% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714951317 | G->A | INTERGENIC | None |