Detailed information of SNP:
|
SNP ID:
sf0714983478(Gbrowse)
Chromosome: chr07 Position: 14983478 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 97.50% | 2.50% |
| All Indica | 782 | 96.29% | 3.71% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 369 | 99.19% | 0.81% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 201 | 93.53% | 6.47% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714983478 | T->C | INTERGENIC | None |