Detailed information of SNP:
|
SNP ID:
sf0715010237(Gbrowse)
Chromosome: chr07 Position: 15010237 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 90.42% | 9.58% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715010237 | T->C | INTERGENIC | None |