Detailed information of SNP:
|
SNP ID:
sf0715018962(Gbrowse)
Chromosome: chr07 Position: 15018962 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 60.19% | 39.81% |
| All Indica | 779 | 90.63% | 9.37% |
| All Japonica | 496 | 9.88% | 90.12% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 363 | 87.05% | 12.95% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 334 | 13.17% | 86.83% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715018962 | T->C | INTERGENIC | None |