Detailed information of SNP:
|
SNP ID:
sf0715026193(Gbrowse)
Chromosome: chr07 Position: 15026193 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 50.35% | 49.65% |
| All Indica | 792 | 19.95% | 80.05% |
| All Japonica | 496 | 90.93% | 9.07% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 371 | 18.33% | 81.67% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 208 | 25.96% | 74.04% |
| Temperate Japonica | 334 | 86.83% | 13.17% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715026193 | C->T | INTERGENIC | None |