Detailed information of SNP:
|
SNP ID:
sf0715039252(Gbrowse)
Chromosome: chr07 Position: 15039252 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 64.31% | 35.69% |
| All Indica | 795 | 50.44% | 49.56% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 372 | 58.06% | 41.94% |
| Indica II | 212 | 19.81% | 80.19% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715039252 | T->C | INTERGENIC | None |