Detailed information of SNP:
|
SNP ID:
sf0715039951(Gbrowse)
Chromosome: chr07 Position: 15039951 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 53.75% | 46.25% |
| All Indica | 794 | 31.11% | 68.89% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 372 | 27.42% | 72.58% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 209 | 53.11% | 46.89% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715039951 | C->T | LOC_Os07g26160(LOC_Os07g26160.1) | INTRON |