Detailed information of SNP:
|
SNP ID:
sf0715056256(Gbrowse)
Chromosome: chr07 Position: 15056256 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.45% | 31.55% |
| All Indica | 797 | 55.96% | 44.04% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 63.37% | 36.63% |
| Indica II | 212 | 29.25% | 70.75% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715056256 | A->T | INTERGENIC | None |