Detailed information of SNP:
|
SNP ID:
sf0715057794(Gbrowse)
Chromosome: chr07 Position: 15057794 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 96.59% | 3.41% |
| All Indica | 788 | 94.80% | 5.20% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 91.83% | 8.17% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715057794 | C->T | INTERGENIC | None |