Detailed information of SNP:
|
SNP ID:
sf0715114545(Gbrowse)
Chromosome: chr07 Position: 15114545 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 93.18% | 6.82% |
| All Indica | 758 | 87.73% | 12.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 90.28% | 9.72% |
| Indica II | 205 | 85.37% | 14.63% |
| Indica Intermediate | 193 | 85.49% | 14.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715114545 | C->T | LOC_Os07g26290(LOC_Os07g26290.1) | INTRON |