Detailed information of SNP:
|
SNP ID:
sf0715114548(Gbrowse)
Chromosome: chr07 Position: 15114548 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 93.40% | 6.60% |
| All Indica | 758 | 88.13% | 11.87% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 90.53% | 9.47% |
| Indica II | 202 | 86.14% | 13.86% |
| Indica Intermediate | 197 | 85.79% | 14.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715114548 | T->G | LOC_Os07g26290(LOC_Os07g26290.1) | INTRON |