Detailed information of SNP:
|
SNP ID:
sf0715114612(Gbrowse)
Chromosome: chr07 Position: 15114612 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 94.78% | 5.22% |
| All Indica | 759 | 90.65% | 9.35% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 92.52% | 7.48% |
| Indica II | 201 | 88.56% | 11.44% |
| Indica Intermediate | 197 | 89.34% | 10.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715114612 | C->T | LOC_Os07g26290(LOC_Os07g26290.1) | INTRON |