Detailed information of SNP:
|
SNP ID:
sf0715140069(Gbrowse)
Chromosome: chr07 Position: 15140069 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 94.53% | 5.47% |
| All Indica | 743 | 91.25% | 8.75% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 57 | 85.96% | 14.04% |
| Indica I | 349 | 95.42% | 4.58% |
| Indica II | 201 | 87.56% | 12.44% |
| Indica Intermediate | 193 | 87.56% | 12.44% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715140069 | C->A | INTERGENIC | None |