Detailed information of SNP:
|
SNP ID:
sf0715149420(Gbrowse)
Chromosome: chr07 Position: 15149420 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 95.97% | 4.03% |
| All Indica | 773 | 93.01% | 6.99% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 361 | 92.52% | 7.48% |
| Indica II | 205 | 92.68% | 7.32% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715149420 | G->A | LOC_Os07g26360(LOC_Os07g26360.1) | INTRON |