Detailed information of SNP:
|
SNP ID:
sf0715172247(Gbrowse)
Chromosome: chr07 Position: 15172247 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 75.05% | 24.95% |
| All Indica | 760 | 58.03% | 41.97% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 360 | 47.22% | 52.78% |
| Indica II | 199 | 75.88% | 24.12% |
| Indica Intermediate | 201 | 59.70% | 40.30% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715172247 | A->G | INTERGENIC | None |