Detailed information of SNP:
|
SNP ID:
sf0715226880(Gbrowse)
Chromosome: chr07 Position: 15226880 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 60.54% | 39.46% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 495 | 1.82% | 98.18% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 333 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715226880 | T->C | INTERGENIC | None |