Detailed information of SNP:
|
SNP ID:
sf0715226962(Gbrowse)
Chromosome: chr07 Position: 15226962 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 57.07% | 42.93% |
| All Indica | 795 | 89.94% | 10.06% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 91.11% | 8.89% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715226962 | T->C | INTERGENIC | None |