Detailed information of SNP:
|
SNP ID:
sf0715244773(Gbrowse)
Chromosome: chr07 Position: 15244773 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 70.54% | 29.46% |
| All Indica | 799 | 49.06% | 50.94% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 56.80% | 43.20% |
| Indica II | 213 | 18.31% | 81.69% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715244773 | T->C | INTERGENIC | None |