Detailed information of SNP:



SNP ID: sf0715249369(Gbrowse)

Chromosome: chr07

Position: 15249369
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 94.70% 5.30%
All Indica797 98.62% 1.38%
All Japonica496 88.31% 11.69%
Aus67 97.01% 2.99%
Indica I375 98.13% 1.87%
Indica II213 98.59% 1.41%
Indica Intermediate209 99.52% 0.48%
Temperate Japonica335 88.06% 11.94%
Tropical Japonica93 90.32% 9.68%
Japonica Intermediate68 86.76% 13.24%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0715249369 T->C INTERGENIC None