Detailed information of SNP:
|
SNP ID:
sf0715249369(Gbrowse)
Chromosome: chr07 Position: 15249369 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 94.70% | 5.30% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 496 | 88.31% | 11.69% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715249369 | T->C | INTERGENIC | None |