Detailed information of SNP:
|
SNP ID:
sf0715250901(Gbrowse)
Chromosome: chr07 Position: 15250901 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 96.53% | 3.47% |
| All Indica | 775 | 96.90% | 3.10% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 369 | 96.21% | 3.79% |
| Indica II | 199 | 97.99% | 2.01% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715250901 | G->A | INTERGENIC | None |