Detailed information of SNP:
|
SNP ID:
sf0715258383(Gbrowse)
Chromosome: chr07 Position: 15258383 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.35% | 46.65% |
| All Indica | 797 | 19.57% | 80.43% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 12.83% | 87.17% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715258383 | G->A | INTERGENIC | None |