Detailed information of SNP:
|
SNP ID:
sf0715274904(Gbrowse)
Chromosome: chr07 Position: 15274904 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 96.32% | 3.68% |
| All Indica | 791 | 99.87% | 0.13% |
| All Japonica | 448 | 91.74% | 8.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 203 | 100.00% | 0.00% |
| Temperate Japonica | 311 | 99.04% | 0.96% |
| Tropical Japonica | 79 | 74.68% | 25.32% |
| Japonica Intermediate | 58 | 75.86% | 24.14% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715274904 | T->C | LOC_Os07g26510(LOC_Os07g26510.1) | INTRON |