Detailed information of SNP:
|
SNP ID:
sf0715289141(Gbrowse)
Chromosome: chr07 Position: 15289141 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 51.17% | 48.83% |
| All Indica | 796 | 82.66% | 17.34% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 65.55% | 34.45% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 21.43% | 78.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715289141 | G->A | INTERGENIC | None |