Detailed information of SNP:
|
SNP ID:
sf0715292307(Gbrowse)
Chromosome: chr07 Position: 15292307 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 62.05% | 37.95% |
| All Indica | 782 | 34.53% | 65.47% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 371 | 40.16% | 59.84% |
| Indica II | 205 | 8.78% | 91.22% |
| Indica Intermediate | 206 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715292307 | C->A | LOC_Os07g26540(LOC_Os07g26540.1) | Non-Synonymous SNP |