Detailed information of SNP:
|
SNP ID:
sf0715304004(Gbrowse)
Chromosome: chr07 Position: 15304004 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.41% | 48.59% |
| All Indica | 798 | 16.04% | 83.96% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 11.76% | 88.24% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715304004 | A->G | LOC_Os07g26570(LOC_Os07g26570.1) | Non-Synonymous SNP |