Detailed information of SNP:
|
SNP ID:
sf0715310458(Gbrowse)
Chromosome: chr07 Position: 15310458 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 70.29% | 29.71% |
| All Indica | 741 | 47.50% | 52.50% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 350 | 51.14% | 48.86% |
| Indica II | 190 | 33.16% | 66.84% |
| Indica Intermediate | 201 | 54.73% | 45.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715310458 | C->T | INTERGENIC | None |