Detailed information of SNP:
|
SNP ID:
sf0715322414(Gbrowse)
Chromosome: chr07 Position: 15322414 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 55.98% | 44.02% |
| All Indica | 795 | 89.81% | 10.19% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715322414 | G->A | INTERGENIC | None |