Detailed information of SNP:
|
SNP ID:
sf0715325478(Gbrowse)
Chromosome: chr07 Position: 15325478 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 56.64% | 43.36% |
| All Indica | 797 | 90.21% | 9.79% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715325478 | C->T | INTERGENIC | None |