Detailed information of SNP:
|
SNP ID:
sf0715367266(Gbrowse)
Chromosome: chr07 Position: 15367266 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 71.04% | 28.96% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 33.40% | 66.60% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 11.04% | 88.96% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715367266 | G->A | INTERGENIC | None |