Detailed information of SNP:
|
SNP ID:
sf0715368513(Gbrowse)
Chromosome: chr07 Position: 15368513 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1349 | 65.75% | 34.25% |
| All Indica | 746 | 88.20% | 11.80% |
| All Japonica | 487 | 30.18% | 69.82% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 358 | 92.18% | 7.82% |
| Indica II | 189 | 95.77% | 4.23% |
| Indica Intermediate | 199 | 73.87% | 26.13% |
| Temperate Japonica | 334 | 9.88% | 90.12% |
| Tropical Japonica | 88 | 80.68% | 19.32% |
| Japonica Intermediate | 65 | 66.15% | 33.85% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715368513 | C->G | LOC_Os07g26640(LOC_Os07g26640.1) | Non-Synonymous SNP |