Detailed information of SNP:
|
SNP ID:
sf0715368994(Gbrowse)
Chromosome: chr07 Position: 15368994 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 88.70% | 11.30% |
| All Indica | 797 | 86.07% | 13.93% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 373 | 79.89% | 20.11% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715368994 | G->C | LOC_Os07g26640(LOC_Os07g26640.1) | INTRON |