Detailed information of SNP:
|
SNP ID:
sf0715375564(Gbrowse)
Chromosome: chr07 Position: 15375564 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.50% | 47.50% |
| All Indica | 799 | 18.40% | 81.60% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 17.07% | 82.93% |
| Indica II | 213 | 5.16% | 94.84% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715375564 | T->A | INTERGENIC | None |