Detailed information of SNP:
|
SNP ID:
sf0715380501(Gbrowse)
Chromosome: chr07 Position: 15380501 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 52.02% | 47.98% |
| All Indica | 796 | 88.32% | 11.68% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715380501 | T->C | INTERGENIC | None |