Detailed information of SNP:
|
SNP ID:
sf0715382445(Gbrowse)
Chromosome: chr07 Position: 15382445 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 77.49% | 22.51% |
| All Indica | 797 | 68.13% | 31.87% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 55.08% | 44.92% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715382445 | G->A | INTERGENIC | None |