Detailed information of SNP:
SNP ID:
sf0715402966(Gbrowse)
Chromosome: chr07 Position: 15402966 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1417 | 50.11% | 49.89% |
All Indica | 799 | 20.28% | 79.72% |
All Japonica | 497 | 99.20% | 0.80% |
Aus | 67 | 19.40% | 80.60% |
Indica I | 375 | 20.80% | 79.20% |
Indica II | 213 | 4.69% | 95.31% |
Indica Intermediate | 211 | 35.07% | 64.93% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0715402966 | T->G | INTERGENIC | None |