Detailed information of SNP:
|
SNP ID:
sf0715402966(Gbrowse)
Chromosome: chr07 Position: 15402966 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 50.11% | 49.89% |
| All Indica | 799 | 20.28% | 79.72% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 20.80% | 79.20% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715402966 | T->G | INTERGENIC | None |