Detailed information of SNP:
|
SNP ID:
sf0715403929(Gbrowse)
Chromosome: chr07 Position: 15403929 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 61.18% | 38.82% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 459 | 1.96% | 98.04% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 300 | 1.67% | 98.33% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715403929 | A->C | INTERGENIC | None |