Detailed information of SNP:
|
SNP ID:
sf0715410342(Gbrowse)
Chromosome: chr07 Position: 15410342 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 63.33% | 36.67% |
| All Indica | 795 | 38.62% | 61.38% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 371 | 46.09% | 53.91% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715410342 | G->A | INTERGENIC | None |