Detailed information of SNP:
|
SNP ID:
sf0715413743(Gbrowse)
Chromosome: chr07 Position: 15413743 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 95.51% | 4.49% |
| All Indica | 784 | 92.47% | 7.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 86.78% | 13.22% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715413743 | A->T | INTERGENIC | None |