Detailed information of SNP:
|
SNP ID:
sf0715415153(Gbrowse)
Chromosome: chr07 Position: 15415153 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 74.30% | 25.70% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 476 | 36.55% | 63.45% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 321 | 14.64% | 85.36% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715415153 | T->C | INTERGENIC | None |