Detailed information of SNP:
|
SNP ID:
sf0715447706(Gbrowse)
Chromosome: chr07 Position: 15447706 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1318 | 79.74% | 20.26% |
| All Indica | 706 | 64.02% | 35.98% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 329 | 75.08% | 24.92% |
| Indica II | 185 | 38.92% | 61.08% |
| Indica Intermediate | 192 | 69.27% | 30.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715447706 | G->A | INTERGENIC | None |