Detailed information of SNP:
|
SNP ID:
sf0715447736(Gbrowse)
Chromosome: chr07 Position: 15447736 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 95.11% | 4.89% |
| All Indica | 792 | 95.71% | 4.29% |
| All Japonica | 485 | 96.91% | 3.09% |
| Aus | 59 | 72.88% | 27.12% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 85 | 91.76% | 8.24% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715447736 | T->C | INTERGENIC | None |