Detailed information of SNP:
|
SNP ID:
sf0715466554(Gbrowse)
Chromosome: chr07 Position: 15466554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 95.55% | 4.45% |
| All Indica | 755 | 92.19% | 7.81% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 349 | 90.26% | 9.74% |
| Indica II | 203 | 92.12% | 7.88% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715466554 | G->A | LOC_Os07g26780(LOC_Os07g26780.1) | SNPs that introduce stop codons |