Detailed information of SNP:
|
SNP ID:
sf0715469965(Gbrowse)
Chromosome: chr07 Position: 15469965 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 89.88% | 10.12% |
| All Indica | 733 | 82.95% | 17.05% |
| All Japonica | 493 | 98.58% | 1.42% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 355 | 90.70% | 9.30% |
| Indica II | 181 | 70.72% | 29.28% |
| Indica Intermediate | 197 | 80.20% | 19.80% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715469965 | C->T | LOC_Os07g26780(LOC_Os07g26780.1) | Synonymous |