Detailed information of SNP:
|
SNP ID:
sf0715471275(Gbrowse)
Chromosome: chr07 Position: 15471275 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1305 | 66.36% | 33.64% |
| All Indica | 730 | 52.19% | 47.81% |
| All Japonica | 477 | 92.66% | 7.34% |
| Aus | 50 | 30.00% | 70.00% |
| Indica I | 337 | 70.33% | 29.67% |
| Indica II | 196 | 23.47% | 76.53% |
| Indica Intermediate | 197 | 49.75% | 50.25% |
| Temperate Japonica | 328 | 97.56% | 2.44% |
| Tropical Japonica | 83 | 74.70% | 25.30% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 35 | 68.57% | 31.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715471275 | T->C | LOC_Os07g26780(LOC_Os07g26780.1) | Synonymous |